SV and fusion transcript

Tabular data format for SV and fusion events

First line must be the header line, with following columns.

• gene_a
  • gene on 5' end of a fusion. Do not apply value for intergenic break-end.
• isoform_a
  • The RefSeq/Ensembl accession of gene_a. Leave blank for intergenic break-end.
• chr_a
  • Chromosome name of gene_a. In case of intergenic translocation, use the 5' end of the break point. Use name "chr10" but not "10".
• position_a
  • Chromosomal position of the 5' end break point, 0-based.
• strand_a
  • + or -
• gene_b
  • Gene on 3' end of a fusion. In case of intergenic translocation, leave unspecified.
• isoform_b
  • The RefSeq/Ensembl accession of gene_b. Leave blank for intergenic break-end.
• chr_b
  • Chromosome name of gene_b. In case of intergenic translocation, use the 3' end of the break point.
• position_b
  • Chromosomal position of the 3' end break point, 0-based.
• strand_b
  • + or -

Optional columns:

• Patient
• Sample
• Sampletype

Order of column doesn't matter.

Lines starting with "#" will be ignored.