Intragenic deletion

Intragenic deletion

First line must be the header line, with following columns. Separate columns by tab. Order of columns does not matter.

• gene
  • Gene symbol.
• isoform
  • RefSeq/Ensembl accession of the isoform.
• rnaPosition
  • optional.
  • RNA nucleotide position of the 5' end of the deleted region on the gene transcript, relative to transcription start site. 1-based.
• rnaDellength
  • RNA nucleotide length of the deleted region, required if "rnaPosition" is used.
• chr
  • Chromosome name, optional
• chr_start
  • Start genomic position, required if "chr" is used.
• chr_stop
  • Stop genomic position, required if "chr" is used.

Other optional columns:

• Patient
• Sample
• Sampletype
• disease

Data lines starting with "#" will be ignored.