Splice Junction
These code block examples can be used to generate a splice junction from a cohort as seen in VisCom.
These code block examples can be used to generate a splice junction from a cohort as seen in VisCom.
Use: This visualization displays the number and color codes the type of mapped junction reads precisely along with a gene model for multiple samples including canonical and non-canonical splice forms. ProteinPaint Google Docs
URL Key Example
This currently is not supported with a url key at this time.
Warning
If you are using a path on the HPC, the file must exist in a directory in the
If you are using a path on the HPC, the file must exist in a directory in the
/tp directory.
For more details, see our manage data section.File Key Example
Be sure to update lines 1, 3, 8, and 9
{
"genome": "hg19",
"nativetracks": "RefGene",
"position": "chr17:7565096-7590856",
"block": true,
"tracks": [
{
"type": "mdsjunction",
"name": "Track name",
"file2": "proteinpaint_demo\/hg19\/junction\/file.gz"
}
]
}