Citing St. Jude Cloud
If you have used St. Jude Cloud and/or accessed data therein for your work, please adhere to the following guidelines when publishing your work:
Clay McLeod, Alexander M Gout, Xin Zhou, Andrew Thrasher, Delaram Rahbarinia, Samuel Warren Brady, Michael Macias, Kirby Birch, David Finkelstein, Jobin Sunny, Rahul Mudunuri, Brent A. Orr, Madison Treadway, Bob Davidson, Tracy K. Ard, Arthur Chiao, Andrew Swistak, Stephanie Wiggins, Scott Foy, Jian Wang, Edgar Sioson, Shuoguo Wang, J Robert Michael, Yu Liu, Xiaotu Ma, Aman Patel, Michael N Edmonson, Mark R Wilkinson, Andrew M Frantz, Ti-Cheng Chang, Liqing Tian, Shaohua Lei, S. M. Ashiqul Islam, Christopher Meyer, Naina Thangaraj, Pamella Tater, Vijay Kandali, Singer Ma, Tuan Nguyen, Omar Abdulgafoor Serang, Irina McGuire, Nedra Robison, Darrell Gentry, Xing Tang, Lance E Palmer, Gang Wu, Ed Suh, Leigh Tanner, James McMurry, Matthew Lear, Alberto S. Pappo, Zhaoming Wang, Carmen L. Wilson, Yong Cheng, Soheil Meshinchi, Ludmil B. Alexandrov, Mitchell J Weiss, Gregory T. Armstrong, Leslie L. Robison, Yutaka Yasui, Kim E. Nichols, David W. Ellison, Chaitanya Bangur, Charles G. Mullighan, Suzanne J. Baker, Michael A. Dyer, Geralyn Miller, Scott Newman, Michael Rusch, Richard Daly, Keith Perry, James R. Downing and Jinghui Zhang. St. Jude Cloud-a Pediatric Cancer Genomic Data Sharing Ecosystem. Cancer Discov January 8 2021 DOI: 10.1158/2159-8290.CD-20-1230
Citation manager formats can be accessed here via the "Citation Tools" link
- Cite the relevant paper for each dataset and/or resource that you used in your study (see 'Dataset' and 'Resource' reference tables below)
- State in the Results and/or Methods section that the relevant data and/or resource was obtained from St. Jude Cloud.
Whole genome sequencing data for relapse tumor samples from 345 pediatric patients were obtained from St. Jude Cloud [1].
[1] McLeod, Gout, et al., St. Jude Cloud-a Pediatric Cancer Genomic Data Sharing Ecosystem. Cancer Discov January 8 2021 DOI: 10.1158/2159-8290.CD-20-1230 (or chosen citation format etc.)
- State in the Data availability section of the manuscript that data and/or resource can be accessed via St. Jude Cloud. Example statement:
Whole genome sequencing data for pediatric relapse tumor samples used for analysis in this study were obtained from St. Jude Cloud[1] (https://www.stjude.cloud)
[1] McLeod, Gout, et al., St. Jude Cloud-a Pediatric Cancer Genomic Data Sharing Ecosystem. Cancer Discov January 8 2021 DOI: 10.1158/2159-8290.CD-20-1230 (or chosen citation format etc.)
Dataset Reference Table
Please download the Schedule 1(s) (linked in table below) to find dataset specific wording of acknowledgement(s).
| St. Jude Cloud Dataset | Publication(s) | Citation Info |
|---|---|---|
| Pediatric Cancer Genome Project (PCGP) | PCGP perspectives paper and the relevant tumor type paper(s) | PCGP Schedule 1 |
| Childhood Solid Tumor Network (CSTN) | CSTN Publication and Resources | CSTN Schedule 1 |
| St. Jude Lifetime (SJLIFE) | SJLIFE paper | SJLIFE Schedule 1 |
| Clinical Pilot | Clinical Pilot paper | Clinical Genomics Schedule 1 |
| Genomes for Kids (G4K) | Genomes for Kids (G4K) Paper | Clinical Genomics Schedule 1 |
| Real-Time Clinical Genomics (RTCG) | No publication yet | Clinical Genomics Schedule 1 |
| Sickle Cell Genome Project (SGP) | Paper In Progress | SGP Schedule 1 |
| Childhood Cancer Survivor Study (CCSS) | CCSS study design paper | CCSS Schedule 1 |
| Pan-Acute Lymphoblastic Leukemia (PanALL) | Paper In Progress | PanALL Schedule 1 |
| Pediatric therapy-related Myeloid Neoplasms (tMN) | tMN paper | tMN Schedule 1 |
| Pediatric Acute Myeloid Leukemia (PedAML) | PedAML paper | PedAML Schedule 1 |
| Bone Marrow Failure and Myelodysplastic Syndromes (BMF/MDS) | Paper In Progress | BMF/MDS Schedule 1 |
| Genomics and transcriptomics of relapsed pediatric AML (RPAML) | Paper In Progress | RPAML Schedule 1 |
| Medulloblastoma Preclinical Ribociclib and Gemcitabine (MBPRG) | Paper In Progress | MBPRG Schedule 1 |
| Pediatric Brain Tumor Portal (PBTP) | PBTP first set of PDOX models, second set of models and the relevant tumor type paper(s) | PBTP Schedule 1 |
| Medulloblastoma Preclinical Ribociclib and Paxalisib (MBPRP) | Paper In Progress | MBPRP Schedule 1 |
| DMG-H3K27a Clonal Evolution (H3K27A_EVOLUTION) | H3K27A_EVOLUTION Publication and Resources | H3K27A_EVOLUTION Schedule 1 |
If you are unsure what dataset(s) the data that you have been vended belongs to, you can find this information in the
sj_datasets column of the SAMPLE_INFO.txt file.Publishing using any of the data files before the embargo date has passed is strictly prohibited as outlined in the Data Access Agreement (DAA).
Resource Reference Table
| St. Jude Cloud Resource | Reference |
|---|---|
| St. Jude Cloud Manuscript | St. Jude Cloud paper |
| ProteinPaint | ProteinPaint paper |
| GenomePaint | GenomePaint paper |
| PeCan Pie | PeCan Pie paper |
| ChIP-Seq Peak Calling | unpublished |
| Rapid RNA-Seq Fusion Detection | paper in progress |
| WARDEN | unpublished |
| Mutational Signatures | Mutational Patterns paper |
| cis-x | paper in progress |
| XenoCP | paper in progress |
| MethylationToActivity | MethylationToActivity paper |
| RNA-Seq Expression Classification | CICERO paper |
| SequencErr | SequencErr paper |
Contact Us
Any questions, comments, or concerns can be directed to our email at support@stjude.cloud.