Citing St. Jude Cloud

Citing St. Jude Cloud

If you have used St. Jude Cloud and/or accessed data therein for your work, please adhere to the following guidelines when publishing your work:

  1. Cite the St. Jude Cloud manuscript published in Cancer Discovery:

Clay McLeod, Alexander M Gout, Xin Zhou, Andrew Thrasher, Delaram Rahbarinia, Samuel Warren Brady, Michael Macias, Kirby Birch, David Finkelstein, Jobin Sunny, Rahul Mudunuri, Brent A. Orr, Madison Treadway, Bob Davidson, Tracy K. Ard, Arthur Chiao, Andrew Swistak, Stephanie Wiggins, Scott Foy, Jian Wang, Edgar Sioson, Shuoguo Wang, J Robert Michael, Yu Liu, Xiaotu Ma, Aman Patel, Michael N Edmonson, Mark R Wilkinson, Andrew M Frantz, Ti-Cheng Chang, Liqing Tian, Shaohua Lei, S. M. Ashiqul Islam, Christopher Meyer, Naina Thangaraj, Pamella Tater, Vijay Kandali, Singer Ma, Tuan Nguyen, Omar Abdulgafoor Serang, Irina McGuire, Nedra Robison, Darrell Gentry, Xing Tang, Lance E Palmer, Gang Wu, Ed Suh, Leigh Tanner, James McMurry, Matthew Lear, Alberto S. Pappo, Zhaoming Wang, Carmen L. Wilson, Yong Cheng, Soheil Meshinchi, Ludmil B. Alexandrov, Mitchell J Weiss, Gregory T. Armstrong, Leslie L. Robison, Yutaka Yasui, Kim E. Nichols, David W. Ellison, Chaitanya Bangur, Charles G. Mullighan, Suzanne J. Baker, Michael A. Dyer, Geralyn Miller, Scott Newman, Michael Rusch, Richard Daly, Keith Perry, James R. Downing and Jinghui Zhang. St. Jude Cloud-a Pediatric Cancer Genomic Data Sharing Ecosystem. Cancer Discov January 8 2021 DOI: 10.1158/2159-8290.CD-20-1230

Note
Citation manager formats can be accessed here via the "Citation Tools" link
  1. Cite the relevant paper for each dataset and/or resource that you used in your study (see 'Dataset' and 'Resource' reference tables below)
  2. State in the Results and/or Methods section that the relevant data and/or resource was obtained from St. Jude Cloud.

    Whole genome sequencing data for relapse tumor samples from 345 pediatric patients were obtained from St. Jude Cloud [1].

    [1] McLeod, Gout, et al., St. Jude Cloud-a Pediatric Cancer Genomic Data Sharing Ecosystem. Cancer Discov January 8 2021 DOI: 10.1158/2159-8290.CD-20-1230 (or chosen citation format etc.)

  3. State in the Data availability section of the manuscript that data and/or resource can be accessed via St. Jude Cloud. Example statement:

Whole genome sequencing data for pediatric relapse tumor samples used for analysis in this study were obtained from St. Jude Cloud[1] (https://www.stjude.cloud)

[1] McLeod, Gout, et al., St. Jude Cloud-a Pediatric Cancer Genomic Data Sharing Ecosystem. Cancer Discov January 8 2021 DOI: 10.1158/2159-8290.CD-20-1230 (or chosen citation format etc.)

Dataset Reference Table

Please download the Schedule 1(s) (linked in table below) to find dataset specific wording of acknowledgement(s).

St. Jude Cloud DatasetPublication(s)Citation Info
Pediatric Cancer Genome Project (PCGP)PCGP perspectives paper and the relevant tumor type paper(s)PCGP Schedule 1
Childhood Solid Tumor Network (CSTN)CSTN Publication and ResourcesCSTN Schedule 1
St. Jude Lifetime (SJLIFE)SJLIFE paperSJLIFE Schedule 1
Clinical PilotClinical Pilot paperClinical Genomics Schedule 1
Genomes for Kids (G4K)Genomes for Kids (G4K) PaperClinical Genomics Schedule 1
Real-Time Clinical Genomics (RTCG)No publication yetClinical Genomics Schedule 1
Sickle Cell Genome Project (SGP)Paper In ProgressSGP Schedule 1
Childhood Cancer Survivor Study (CCSS)CCSS study design paperCCSS Schedule 1
Pan-Acute Lymphoblastic Leukemia (PanALL)Paper In ProgressPanALL Schedule 1
Pediatric therapy-related Myeloid Neoplasms (tMN)tMN papertMN Schedule 1
Pediatric Acute Myeloid Leukemia (PedAML)PedAML paperPedAML Schedule 1
Bone Marrow Failure and Myelodysplastic Syndromes (BMF/MDS)Paper In ProgressBMF/MDS Schedule 1
Genomics and transcriptomics of relapsed pediatric AML (RPAML)Paper In ProgressRPAML Schedule 1
Medulloblastoma Preclinical Ribociclib and Gemcitabine (MBPRG)Paper In ProgressMBPRG Schedule 1
Pediatric Brain Tumor Portal (PBTP)PBTP first set of PDOX models, second set of models and the relevant tumor type paper(s)PBTP Schedule 1
Medulloblastoma Preclinical Ribociclib and Paxalisib (MBPRP)Paper In ProgressMBPRP Schedule 1
DMG-H3K27a Clonal Evolution (H3K27A_EVOLUTION)H3K27A_EVOLUTION Publication and ResourcesH3K27A_EVOLUTION Schedule 1
Note
If you are unsure what dataset(s) the data that you have been vended belongs to, you can find this information in the sj_datasets column of the SAMPLE_INFO.txt file.
Warning
Publishing using any of the data files before the embargo date has passed is strictly prohibited as outlined in the Data Access Agreement (DAA).

Resource Reference Table

St. Jude Cloud ResourceReference
St. Jude Cloud ManuscriptSt. Jude Cloud paper
ProteinPaintProteinPaint paper
GenomePaintGenomePaint paper
PeCan PiePeCan Pie paper
ChIP-Seq Peak Callingunpublished
Rapid RNA-Seq Fusion Detectionpaper in progress
WARDENunpublished
Mutational SignaturesMutational Patterns paper
cis-xpaper in progress
XenoCPpaper in progress
MethylationToActivityMethylationToActivity paper
RNA-Seq Expression ClassificationCICERO paper
SequencErrSequencErr paper

Contact Us

Any questions, comments, or concerns can be directed to our email at support@stjude.cloud.