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and create boxplots, mouse over the \"Options ⇣\" for a menu:",{"type":430,"tag":431,"props":586,"children":587},{},[588],{"type":430,"tag":460,"props":589,"children":592},{"alt":590,"src":591},"image 11","/img/visualization-community/proteinpaint/viewing-expression-data/image11.png",[],{"type":430,"tag":431,"props":594,"children":595},{},[596],{"type":435,"value":597},"Select \"Boxplots\" to show the cancer type listing in a new panel.\nThis listing shows highest groups by default:",{"type":430,"tag":431,"props":599,"children":600},{},[601],{"type":430,"tag":460,"props":602,"children":605},{"alt":603,"src":604},"image 17","/img/visualization-community/proteinpaint/viewing-expression-data/image17.png",[],{"type":430,"tag":431,"props":607,"children":608},{},[609],{"type":435,"value":610},"Clicking on the labels in each group to reveal more detailed groupings:",{"type":430,"tag":431,"props":612,"children":613},{},[614],{"type":430,"tag":460,"props":615,"children":618},{"alt":616,"src":617},"image 13","/img/visualization-community/proteinpaint/viewing-expression-data/image13.png",[],{"type":430,"tag":431,"props":620,"children":621},{},[622],{"type":435,"value":623},"A box labeled with a number in each row indicates the cohort size for each cancer type.\nClick on the box to show a boxplot representing the gene expression distribution in the selected cohort:",{"type":430,"tag":431,"props":625,"children":626},{},[627,632],{"type":430,"tag":460,"props":628,"children":631},{"alt":629,"src":630},"image 7","/img/visualization-community/proteinpaint/viewing-expression-data/image7.png",[],{"type":430,"tag":460,"props":633,"children":636},{"alt":634,"src":635},"image 9","/img/visualization-community/proteinpaint/viewing-expression-data/image9.png",[],{"type":430,"tag":431,"props":638,"children":639},{},[640],{"type":435,"value":641},"In 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16","/img/visualization-community/proteinpaint/viewing-expression-data/image16.png",[],{"type":430,"tag":431,"props":680,"children":681},{},[682],{"type":435,"value":683},"The center of the sunburst chart shows the range of FPKM values and the number of samples within that range.\nThe chart shows up to four layers to represent the cancer type stratification, with inner to outer layers representing: cancer group, cancer, subtype, and subgroup.\nThis is in unison to the hierarchical list shown above.\nThe surrounding text labels represent the name of each smallest group in selected samples.\nMouse over an arc from any of the four layers to see the full name and sample count at the center:",{"type":430,"tag":431,"props":685,"children":686},{},[687],{"type":430,"tag":460,"props":688,"children":691},{"alt":689,"src":690},"image 10","/img/visualization-community/proteinpaint/viewing-expression-data/image10.png",[],{"type":430,"tag":431,"props":693,"children":694},{},[695],{"type":435,"value":696},"An orange-colored box behind the sunburst chart marks out the FPKM value range.\nUser can slide this bar left or right and see the change to the sunburst chart to conveniently explore the cancer type composition of samples stratified by an gene expression level gradient.\nUser can also drag on the thick bars on top of the orange box to widen or narrow the box and change the span of FPKM value range.\nTo dismiss the FPKM range selection, click on the center of the sunburst chart.",{"type":430,"tag":431,"props":698,"children":699},{},[700],{"type":435,"value":701},"Finally, the screenshot and data of the sample expressions can be exported through the menu options, in the same fashion with the mutation\ndata.\nThe screenshot will retain all items currently shown in the expression panel, including rope graph, boxplots, and the sunburst chart.",{"title":424,"searchDepth":703,"depth":703,"links":704},2,[705],{"id":439,"depth":703,"text":442,"children":706},[707,709],{"id":563,"depth":708,"text":566},3,{"id":662,"depth":708,"text":665},"markdown","content:5.visualization-community:4.proteinpaint:7.viewing-expression-data.md","content","5.visualization-community/4.proteinpaint/7.viewing-expression-data.md","5.visualization-community/4.proteinpaint/7.viewing-expression-data","md",[717,719],{"_path":326,"title":325,"description":718},"Fusion gene data are available for a subset of Pediatric cancer samples (Ph-like B-cell acute lymphoblastic leukemia, Fig. 1b), detected from RNA-Seq data using the software CICERO (Li, Y. and Zhang, J. in preparation).\nThe comprehensive set of fusion gene information from all Pediatric samples is being produced at the time of writing and will be made available on ProteinPaint.",{"_path":332,"title":331,"description":424},1791243635884]