[{"data":1,"prerenderedAt":1349},["ShallowReactive",2],{"navigation":3,"/visualization-community/code-block-library/bigwig":421,"/visualization-community/code-block-library/bigwig-surround":1344},[4,19,25,131,197],{"title":5,"_path":6,"children":7,"icon":18},"Overview","/overview",[8,9,12,15],{"title":5,"_path":6},{"title":10,"_path":11},"About our Ecosystem","/overview/ecosystem",{"title":13,"_path":14},"Citing St. Jude Cloud","/overview/citing-stjude-cloud",{"title":16,"_path":17},"Frequently Asked Questions","/overview/faq","sjc-icon:child-logo",{"title":20,"_path":21,"children":22,"icon":24},"CC4K","/cc4k",[23],{"title":5,"_path":21},"sjc-icon:ontology-tree",{"title":26,"_path":27,"children":28,"icon":130},"Genomics Platform","/genomics-platform",[29,49,62,80,99],{"title":30,"_path":31,"children":32},"Getting Started","/genomics-platform/getting-started",[33,35,38,41,44,46],{"title":5,"_path":34},"/genomics-platform/getting-started/overview",{"title":36,"_path":37},"Accounts and Billing","/genomics-platform/getting-started/accounts-and-billing",{"title":39,"_path":40},"Making a Data Request","/genomics-platform/getting-started/making-a-data-request",{"title":42,"_path":43},"Filling Out the DAA","/genomics-platform/getting-started/filling-out-the-daa",{"title":16,"_path":45},"/genomics-platform/getting-started/faq",{"title":47,"_path":48},"Glossary","/genomics-platform/getting-started/glossary",{"title":50,"_path":51,"children":52},"About Our Data","/genomics-platform/about-our-data",[53,56,59],{"title":54,"_path":55},"Data Sets and Data Access Units","/genomics-platform/about-our-data/data-sets-and-data-access-units",{"title":57,"_path":58},"File Formats and Sequencing Information","/genomics-platform/about-our-data/file-formats-and-sequencing-information",{"title":60,"_path":61},"Metadata and Clinical Information","/genomics-platform/about-our-data/metadata-and-clinical-information",{"title":63,"_path":64,"children":65},"Managing Data","/genomics-platform/managing-data",[66,68,71,74,77],{"title":5,"_path":67},"/genomics-platform/managing-data/overview",{"title":69,"_path":70},"Upload/Download Data (Local)","/genomics-platform/managing-data/upload-download-data-local",{"title":72,"_path":73},"Upload/Download Data (Cluster)","/genomics-platform/managing-data/upload-download-data-cluster",{"title":75,"_path":76},"Upload/Download Data (DNAnexus)","/genomics-platform/managing-data/upload-download-data-dnanexus",{"title":78,"_path":79},"Renewing Your DAA","/genomics-platform/managing-data/renewing-your-daa",{"title":81,"_path":82,"children":83},"Analyzing Data","/genomics-platform/analyzing-data",[84,87,90,93,96],{"title":85,"_path":86},"Command Line Interaction","/genomics-platform/analyzing-data/command-line-interaction",{"title":88,"_path":89},"Running Our Workflows","/genomics-platform/analyzing-data/running-our-workflows",{"title":91,"_path":92},"Creating a Cloud Application","/genomics-platform/analyzing-data/creating-a-cloud-app",{"title":94,"_path":95},"Interactive Nodes","/genomics-platform/analyzing-data/interactive-nodes",{"title":97,"_path":98},"Visualizing NGS Data","/genomics-platform/analyzing-data/visualizing-ngs-data",{"title":100,"_path":101,"children":102},"Workflow Guides","/genomics-platform/workflow-guides",[103,106,109,112,115,118,121,124,127],{"title":104,"_path":105},"ChIP-Seq Peak Calling","/genomics-platform/workflow-guides/chipseq",{"title":107,"_path":108},"cis-X","/genomics-platform/workflow-guides/cisx",{"title":110,"_path":111},"MethylationToActivity","/genomics-platform/workflow-guides/methylation-to-activity",{"title":113,"_path":114},"Mutational Signatures","/genomics-platform/workflow-guides/mutational-signatures",{"title":116,"_path":117},"Rapid RNA-Seq","/genomics-platform/workflow-guides/rapid-rnaseq",{"title":119,"_path":120},"RNA-Seq Expression Classification","/genomics-platform/workflow-guides/rnaseq-expression-classification",{"title":122,"_path":123},"SEAseq","/genomics-platform/workflow-guides/seaseq",{"title":125,"_path":126},"SequencErr","/genomics-platform/workflow-guides/sequencerr",{"title":128,"_path":129},"WARDEN Differential Gene Expression","/genomics-platform/workflow-guides/warden","sjc-icon:genomics-platform",{"title":132,"_path":133,"children":134,"icon":196},"PeCan","/pecan",[135,149,156,174,181,190],{"title":5,"_path":136,"children":137},"/pecan/overview",[138,140,143,146],{"title":30,"_path":139},"/pecan/overview/getting-started",{"title":141,"_path":142},"Methods and Data","/pecan/overview/methods-and-data",{"title":144,"_path":145},"Videos","/pecan/overview/videos",{"title":147,"_path":148},"FAQ","/pecan/overview/faq",{"title":150,"_path":151,"children":152},"Cohort Building","/pecan/cohort-building",[153],{"title":154,"_path":155},"Create Custom Cohorts","/pecan/cohort-building/cohort-building",{"title":157,"_path":158,"children":159},"Data Facets","/pecan/data-facets",[160,163,165,168,171],{"title":161,"_path":162},"Variants","/pecan/data-facets/variants",{"title":113,"_path":164},"/pecan/data-facets/mutational-signatures",{"title":166,"_path":167},"Expression","/pecan/data-facets/expression",{"title":169,"_path":170},"Histology","/pecan/data-facets/histology",{"title":172,"_path":173},"Use Cases","/pecan/data-facets/use-cases",{"title":175,"_path":176,"children":177},"Accessibility","/pecan/accessibility",[178],{"title":179,"_path":180},"Keyboard Shortcuts","/pecan/accessibility/keyboard-shortcuts",{"title":182,"_path":183,"children":184},"PeCan PIE","/pecan/pecan-pie",[185,188],{"title":186,"_path":187},"What is PIE","/pecan/pecan-pie/what-is-pie",{"title":147,"_path":189},"/pecan/pecan-pie/faq",{"title":191,"_path":192,"children":193},"Release Notes","/pecan/release-notes",[194],{"title":195,"_path":192},"PeCan Release Notes","sjc-icon:pecan",{"title":198,"_path":199,"children":200,"icon":420},"Visualization Community","/visualization-community",[201,215,246,307,411],{"title":5,"_path":202,"children":203},"/visualization-community/overview",[204,207,210,213],{"title":205,"_path":206},"What is Visualization Community","/visualization-community/overview/what-is-visualization-community",{"title":208,"_path":209},"What are ProteinPaint and GenomePaint","/visualization-community/overview/what-are-proteinpaint-and-genome-paint",{"title":211,"_path":212},"Data Types","/visualization-community/overview/data-types-and-graphs",{"title":147,"_path":214},"/visualization-community/overview/faq",{"title":30,"_path":216,"children":217},"/visualization-community/getting-started",[218,220,223,226,229,232,235,238,241,243],{"title":5,"_path":219},"/visualization-community/getting-started/overview",{"title":221,"_path":222},"How to Sign-in","/visualization-community/getting-started/how-to-sign-in",{"title":224,"_path":225},"How to Use the VisEditor","/visualization-community/getting-started/how-to-use-the-viseditor",{"title":227,"_path":228},"Tracks and Apps","/visualization-community/getting-started/tracks-and-apps",{"title":230,"_path":231},"Manage Your Data","/visualization-community/getting-started/manage-your-data",{"title":233,"_path":234},"Collections & Communities","/visualization-community/getting-started/collections-and-communities",{"title":236,"_path":237},"Public vs. Private Visualizations","/visualization-community/getting-started/public-vs-private-visualizations",{"title":239,"_path":240},"Embedding","/visualization-community/getting-started/embedding",{"title":144,"_path":242},"/visualization-community/getting-started/videos",{"title":244,"_path":245},"NEW Data Download","/visualization-community/getting-started/new-data-download",{"title":247,"_path":248,"children":249},"Code Block Library","/visualization-community/code-block-library",[250,253,256,259,262,265,268,271,274,277,280,283,286,289,292,295,298,301,304],{"title":251,"_path":252},"Code Block Basics","/visualization-community/code-block-library/code-block-basics",{"title":254,"_path":255},"Allelic Imbalance","/visualization-community/code-block-library/allelic-imbalance",{"title":257,"_path":258},"Arc","/visualization-community/code-block-library/arc",{"title":260,"_path":261},"BAM","/visualization-community/code-block-library/bam",{"title":263,"_path":264},"BigWig","/visualization-community/code-block-library/bigwig",{"title":266,"_path":267},"BigWig Stranded","/visualization-community/code-block-library/bigwig-stranded",{"title":269,"_path":270},"Expression Rank","/visualization-community/code-block-library/expression-rank",{"title":272,"_path":273},"Hi-C","/visualization-community/code-block-library/hi-c",{"title":275,"_path":276},"Heatmap","/visualization-community/code-block-library/heatmap",{"title":278,"_path":279},"JSON BED","/visualization-community/code-block-library/json-bed",{"title":281,"_path":282},"Lollipop","/visualization-community/code-block-library/lollipop",{"title":284,"_path":285},"MA Volcano","/visualization-community/code-block-library/ma-volcano",{"title":287,"_path":288},"Profile Gene Value","/visualization-community/code-block-library/profile-gene-value",{"title":290,"_path":291},"RNA Splice Junction","/visualization-community/code-block-library/rna-splice-junction",{"title":293,"_path":294},"Single Cell","/visualization-community/code-block-library/single-cell",{"title":296,"_path":297},"Splice Junctions Cohort","/visualization-community/code-block-library/splice-junctions-cohort",{"title":299,"_path":300},"Track List and Facet Table","/visualization-community/code-block-library/track-list-and-facet-table",{"title":302,"_path":303},"t-SNE","/visualization-community/code-block-library/t-sne",{"title":305,"_path":306},"VCF","/visualization-community/code-block-library/vcf",{"title":308,"_path":309,"children":310},"ProteinPaint","/visualization-community/proteinpaint",[311,313,316,318,321,324,327,330,333,336,339,342,345,348,351,354,357,360,363,366,369,372,375,378,381,384,387,390,393,396,399,402,405,408],{"title":308,"_path":312},"/visualization-community/proteinpaint/proteinpaint",{"title":314,"_path":315},"Introduction","/visualization-community/proteinpaint/introduction",{"title":30,"_path":317},"/visualization-community/proteinpaint/getting-started",{"title":319,"_path":320},"Loading Datasets","/visualization-community/proteinpaint/loading-datasets",{"title":322,"_path":323},"Viewing SNV/Indel Mutations","/visualization-community/proteinpaint/viewing-snv-indel-mutations",{"title":325,"_path":326},"Viewing Gene Fusions","/visualization-community/proteinpaint/viewing-gene-fusions",{"title":328,"_path":329},"Viewing Expression Data","/visualization-community/proteinpaint/viewing-expression-data",{"title":331,"_path":332},"Filtering Mutations","/visualization-community/proteinpaint/filtering-mutations",{"title":334,"_path":335},"Exporting Figures and Data","/visualization-community/proteinpaint/exporting-figures-and-data",{"title":337,"_path":338},"Using the Gene Table","/visualization-community/proteinpaint/using-the-gene-table",{"title":340,"_path":341},"Using the Sample Table","/visualization-community/proteinpaint/using-the-sample-table",{"title":343,"_path":344},"Using the Heatmap","/visualization-community/proteinpaint/using-the-heatmap",{"title":346,"_path":347},"Using Disease Pie Charts","/visualization-community/proteinpaint/using-disease-pie-charts",{"title":349,"_path":350},"Stratifying Mutations by Cancer Subtype","/visualization-community/proteinpaint/stratifying-mutations-by-cancer-subtype",{"title":352,"_path":353},"SNV and Indel","/visualization-community/proteinpaint/snv-and-indel",{"title":355,"_path":356},"SV and fusion transcript","/visualization-community/proteinpaint/sv-and-fusion-transcript",{"title":358,"_path":359},"Copy Number Variants","/visualization-community/proteinpaint/copy-number-variants",{"title":361,"_path":362},"Internal tandem duplications","/visualization-community/proteinpaint/internal-tandem-duplications",{"title":364,"_path":365},"Intragenic deletion","/visualization-community/proteinpaint/intragenic-deletion",{"title":367,"_path":368},"Truncation, N-loss, or C-loss","/visualization-community/proteinpaint/truncation",{"title":370,"_path":371},"JSON-BED","/visualization-community/proteinpaint/json-bed",{"title":373,"_path":374},"Splice Junction","/visualization-community/proteinpaint/splice-junction",{"title":376,"_path":377},"Profile-Gene-Value","/visualization-community/proteinpaint/profile-gene-value",{"title":379,"_path":380},"Bampile","/visualization-community/proteinpaint/bampile",{"title":382,"_path":383},"Add Custom Protein Domains","/visualization-community/proteinpaint/add-custom-protein-domains",{"title":385,"_path":386},"Using Custom Tracks","/visualization-community/proteinpaint/using-custom-tracks",{"title":388,"_path":389},"Visualize Your Mutation Data","/visualization-community/proteinpaint/visualize-your-mutation-data",{"title":391,"_path":392},"Loading SNV/Indel Mutations from a File","/visualization-community/proteinpaint/loading-mutations-from-file",{"title":394,"_path":395},"Uploaded Mutation Data User Interface","/visualization-community/proteinpaint/uploaded-mutation-data",{"title":397,"_path":398},"Loading a TCGA MAF File","/visualization-community/proteinpaint/loading-tcga-maf-file",{"title":400,"_path":401},"Using a VCF File","/visualization-community/proteinpaint/using-vcf-file",{"title":403,"_path":404},"Embedding ProteinPaint","/visualization-community/proteinpaint/embedding-proteinpaint",{"title":406,"_path":407},"URL Parameters","/visualization-community/proteinpaint/url-parameters",{"title":409,"_path":410},"Organizing Data into a Study View","/visualization-community/proteinpaint/study-view",{"title":412,"_path":413,"children":414},"GenomePaint","/visualization-community/genomepaint",[415,417],{"title":412,"_path":416},"/visualization-community/genomepaint/genomepaint",{"title":418,"_path":419},"GenomePaint User Guide","/visualization-community/genomepaint/genomepaint-user-guide","sjc-icon:viz",{"_path":264,"_dir":422,"_draft":423,"_partial":423,"_locale":424,"title":263,"description":425,"body":426,"_type":1338,"_id":1339,"_source":1340,"_file":1341,"_stem":1342,"_extension":1343},"code-block-library",false,"","These code block examples can be used to generate a figure using bigwig data as seen in VisCom.",{"type":427,"children":428,"toc":1330},"root",[429,448,460,467,495,502,932,938,966,971,1324],{"type":430,"tag":431,"props":432,"children":433},"element","p",{},[434,437,446],{"type":435,"value":436},"text","These code block examples can be used to generate a figure using bigwig data as seen in ",{"type":430,"tag":438,"props":439,"children":443},"a",{"href":440,"rel":441},"https://viz.stjude.cloud/st-jude-cloud-demo/visualization/genomepaint-bigwig-example~34",[442],"nofollow",[444],{"type":435,"value":445},"VisCom",{"type":435,"value":447},".",{"type":430,"tag":431,"props":449,"children":450},{},[451,453],{"type":435,"value":452},"Use: This format shows the depths of reads in RNA seq, ChIP seq, or genomic sequence as aligned to a reference genome.\n",{"type":430,"tag":438,"props":454,"children":457},{"href":455,"rel":456},"https://docs.google.com/document/d/1ZnPZKSSajWyNISSLELMozKxrZHQbdxQkkkQFnxw6zTs/edit#heading=h.6spyog171fm9",[442],[458],{"type":435,"value":459},"ProteinPaint Google Docs",{"type":430,"tag":461,"props":462,"children":464},"h2",{"id":463},"url-key-example",[465],{"type":435,"value":466},"URL Key Example",{"type":430,"tag":468,"props":469,"children":472},"callout",{"color":470,"icon":471},"orange","i-heroicons-exclamation-circle",[473],{"type":430,"tag":431,"props":474,"children":475},{},[476,482,486,488,493],{"type":430,"tag":477,"props":478,"children":479},"strong",{},[480],{"type":435,"value":481},"Warning",{"type":430,"tag":483,"props":484,"children":485},"br",{},[],{"type":435,"value":487},"\nIf you are using DNAnexus links, be sure to extend the duration.\nSee our ",{"type":430,"tag":438,"props":489,"children":490},{"href":231},[491],{"type":435,"value":492},"manage data",{"type":435,"value":494}," section.",{"type":430,"tag":496,"props":497,"children":499},"h3",{"id":498},"be-sure-to-update-lines-1-3-8-and-9",[500],{"type":435,"value":501},"Be sure to update lines 1, 3, 8, and 9",{"type":430,"tag":503,"props":504,"children":508},"pre",{"className":505,"code":506,"language":507,"meta":424,"style":424},"language-js shiki shiki-themes material-theme-lighter material-theme material-theme-palenight","{\n    \"genome\": \"hg19\",\n    \"nativetracks\": \"RefGene\",\n    \"position\": \"chr17:7565096-7590856\",\n    \"block\": true,\n    \"tracks\": [\n        {\n            \"type\": \"bigwig\",\n            \"name\": \"Track name\",\n            \"url\": \"https:\\/\\/westus.dl.azure.dnanex.us\\/F\\/D\\/gvz3YyGqb2v1gZGZQy67QQbPKfKY70q3yZb8ZZBB\\/Nalm6_ATACseq.bw\",   \n            \"height\": 100\n        }\n    ]\n}\n","js",[509],{"type":430,"tag":510,"props":511,"children":512},"code",{"__ignoreMap":424},[513,525,569,607,645,676,698,707,748,786,878,905,914,923],{"type":430,"tag":514,"props":515,"children":518},"span",{"class":516,"line":517},"line",1,[519],{"type":430,"tag":514,"props":520,"children":522},{"style":521},"--shiki-light:#39ADB5;--shiki-default:#89DDFF;--shiki-dark:#89DDFF",[523],{"type":435,"value":524},"{\n",{"type":430,"tag":514,"props":526,"children":528},{"class":516,"line":527},2,[529,534,540,545,551,555,560,564],{"type":430,"tag":514,"props":530,"children":531},{"style":521},[532],{"type":435,"value":533},"    \"",{"type":430,"tag":514,"props":535,"children":537},{"style":536},"--shiki-light:#91B859;--shiki-default:#C3E88D;--shiki-dark:#C3E88D",[538],{"type":435,"value":539},"genome",{"type":430,"tag":514,"props":541,"children":542},{"style":521},[543],{"type":435,"value":544},"\"",{"type":430,"tag":514,"props":546,"children":548},{"style":547},"--shiki-light:#E53935;--shiki-default:#F07178;--shiki-dark:#F07178",[549],{"type":435,"value":550},": ",{"type":430,"tag":514,"props":552,"children":553},{"style":521},[554],{"type":435,"value":544},{"type":430,"tag":514,"props":556,"children":557},{"style":536},[558],{"type":435,"value":559},"hg19",{"type":430,"tag":514,"props":561,"children":562},{"style":521},[563],{"type":435,"value":544},{"type":430,"tag":514,"props":565,"children":566},{"style":521},[567],{"type":435,"value":568},",\n",{"type":430,"tag":514,"props":570,"children":572},{"class":516,"line":571},3,[573,577,582,586,590,594,599,603],{"type":430,"tag":514,"props":574,"children":575},{"style":521},[576],{"type":435,"value":533},{"type":430,"tag":514,"props":578,"children":579},{"style":536},[580],{"type":435,"value":581},"nativetracks",{"type":430,"tag":514,"props":583,"children":584},{"style":521},[585],{"type":435,"value":544},{"type":430,"tag":514,"props":587,"children":588},{"style":547},[589],{"type":435,"value":550},{"type":430,"tag":514,"props":591,"children":592},{"style":521},[593],{"type":435,"value":544},{"type":430,"tag":514,"props":595,"children":596},{"style":536},[597],{"type":435,"value":598},"RefGene",{"type":430,"tag":514,"props":600,"children":601},{"style":521},[602],{"type":435,"value":544},{"type":430,"tag":514,"props":604,"children":605},{"style":521},[606],{"type":435,"value":568},{"type":430,"tag":514,"props":608,"children":610},{"class":516,"line":609},4,[611,615,620,624,628,632,637,641],{"type":430,"tag":514,"props":612,"children":613},{"style":521},[614],{"type":435,"value":533},{"type":430,"tag":514,"props":616,"children":617},{"style":536},[618],{"type":435,"value":619},"position",{"type":430,"tag":514,"props":621,"children":622},{"style":521},[623],{"type":435,"value":544},{"type":430,"tag":514,"props":625,"children":626},{"style":547},[627],{"type":435,"value":550},{"type":430,"tag":514,"props":629,"children":630},{"style":521},[631],{"type":435,"value":544},{"type":430,"tag":514,"props":633,"children":634},{"style":536},[635],{"type":435,"value":636},"chr17:7565096-7590856",{"type":430,"tag":514,"props":638,"children":639},{"style":521},[640],{"type":435,"value":544},{"type":430,"tag":514,"props":642,"children":643},{"style":521},[644],{"type":435,"value":568},{"type":430,"tag":514,"props":646,"children":648},{"class":516,"line":647},5,[649,653,658,662,666,672],{"type":430,"tag":514,"props":650,"children":651},{"style":521},[652],{"type":435,"value":533},{"type":430,"tag":514,"props":654,"children":655},{"style":536},[656],{"type":435,"value":657},"block",{"type":430,"tag":514,"props":659,"children":660},{"style":521},[661],{"type":435,"value":544},{"type":430,"tag":514,"props":663,"children":664},{"style":547},[665],{"type":435,"value":550},{"type":430,"tag":514,"props":667,"children":669},{"style":668},"--shiki-light:#FF5370;--shiki-default:#FF9CAC;--shiki-dark:#FF9CAC",[670],{"type":435,"value":671},"true",{"type":430,"tag":514,"props":673,"children":674},{"style":521},[675],{"type":435,"value":568},{"type":430,"tag":514,"props":677,"children":679},{"class":516,"line":678},6,[680,684,689,693],{"type":430,"tag":514,"props":681,"children":682},{"style":521},[683],{"type":435,"value":533},{"type":430,"tag":514,"props":685,"children":686},{"style":536},[687],{"type":435,"value":688},"tracks",{"type":430,"tag":514,"props":690,"children":691},{"style":521},[692],{"type":435,"value":544},{"type":430,"tag":514,"props":694,"children":695},{"style":547},[696],{"type":435,"value":697},": [\n",{"type":430,"tag":514,"props":699,"children":701},{"class":516,"line":700},7,[702],{"type":430,"tag":514,"props":703,"children":704},{"style":521},[705],{"type":435,"value":706},"        {\n",{"type":430,"tag":514,"props":708,"children":710},{"class":516,"line":709},8,[711,716,721,725,730,735,740,744],{"type":430,"tag":514,"props":712,"children":713},{"style":521},[714],{"type":435,"value":715},"            \"",{"type":430,"tag":514,"props":717,"children":718},{"style":547},[719],{"type":435,"value":720},"type",{"type":430,"tag":514,"props":722,"children":723},{"style":521},[724],{"type":435,"value":544},{"type":430,"tag":514,"props":726,"children":727},{"style":521},[728],{"type":435,"value":729},":",{"type":430,"tag":514,"props":731,"children":732},{"style":521},[733],{"type":435,"value":734}," \"",{"type":430,"tag":514,"props":736,"children":737},{"style":536},[738],{"type":435,"value":739},"bigwig",{"type":430,"tag":514,"props":741,"children":742},{"style":521},[743],{"type":435,"value":544},{"type":430,"tag":514,"props":745,"children":746},{"style":521},[747],{"type":435,"value":568},{"type":430,"tag":514,"props":749,"children":751},{"class":516,"line":750},9,[752,756,761,765,769,773,778,782],{"type":430,"tag":514,"props":753,"children":754},{"style":521},[755],{"type":435,"value":715},{"type":430,"tag":514,"props":757,"children":758},{"style":547},[759],{"type":435,"value":760},"name",{"type":430,"tag":514,"props":762,"children":763},{"style":521},[764],{"type":435,"value":544},{"type":430,"tag":514,"props":766,"children":767},{"style":521},[768],{"type":435,"value":729},{"type":430,"tag":514,"props":770,"children":771},{"style":521},[772],{"type":435,"value":734},{"type":430,"tag":514,"props":774,"children":775},{"style":536},[776],{"type":435,"value":777},"Track name",{"type":430,"tag":514,"props":779,"children":780},{"style":521},[781],{"type":435,"value":544},{"type":430,"tag":514,"props":783,"children":784},{"style":521},[785],{"type":435,"value":568},{"type":430,"tag":514,"props":787,"children":789},{"class":516,"line":788},10,[790,794,799,803,807,811,816,822,827,832,837,841,846,850,855,859,864,868,873],{"type":430,"tag":514,"props":791,"children":792},{"style":521},[793],{"type":435,"value":715},{"type":430,"tag":514,"props":795,"children":796},{"style":547},[797],{"type":435,"value":798},"url",{"type":430,"tag":514,"props":800,"children":801},{"style":521},[802],{"type":435,"value":544},{"type":430,"tag":514,"props":804,"children":805},{"style":521},[806],{"type":435,"value":729},{"type":430,"tag":514,"props":808,"children":809},{"style":521},[810],{"type":435,"value":734},{"type":430,"tag":514,"props":812,"children":813},{"style":536},[814],{"type":435,"value":815},"https:",{"type":430,"tag":514,"props":817,"children":819},{"style":818},"--shiki-light:#90A4AE;--shiki-default:#EEFFFF;--shiki-dark:#BABED8",[820],{"type":435,"value":821},"\\/\\/",{"type":430,"tag":514,"props":823,"children":824},{"style":536},[825],{"type":435,"value":826},"westus.dl.azure.dnanex.us",{"type":430,"tag":514,"props":828,"children":829},{"style":818},[830],{"type":435,"value":831},"\\/",{"type":430,"tag":514,"props":833,"children":834},{"style":536},[835],{"type":435,"value":836},"F",{"type":430,"tag":514,"props":838,"children":839},{"style":818},[840],{"type":435,"value":831},{"type":430,"tag":514,"props":842,"children":843},{"style":536},[844],{"type":435,"value":845},"D",{"type":430,"tag":514,"props":847,"children":848},{"style":818},[849],{"type":435,"value":831},{"type":430,"tag":514,"props":851,"children":852},{"style":536},[853],{"type":435,"value":854},"gvz3YyGqb2v1gZGZQy67QQbPKfKY70q3yZb8ZZBB",{"type":430,"tag":514,"props":856,"children":857},{"style":818},[858],{"type":435,"value":831},{"type":430,"tag":514,"props":860,"children":861},{"style":536},[862],{"type":435,"value":863},"Nalm6_ATACseq.bw",{"type":430,"tag":514,"props":865,"children":866},{"style":521},[867],{"type":435,"value":544},{"type":430,"tag":514,"props":869,"children":870},{"style":521},[871],{"type":435,"value":872},",",{"type":430,"tag":514,"props":874,"children":875},{"style":547},[876],{"type":435,"value":877},"   \n",{"type":430,"tag":514,"props":879,"children":881},{"class":516,"line":880},11,[882,886,891,895,899],{"type":430,"tag":514,"props":883,"children":884},{"style":521},[885],{"type":435,"value":715},{"type":430,"tag":514,"props":887,"children":888},{"style":547},[889],{"type":435,"value":890},"height",{"type":430,"tag":514,"props":892,"children":893},{"style":521},[894],{"type":435,"value":544},{"type":430,"tag":514,"props":896,"children":897},{"style":521},[898],{"type":435,"value":729},{"type":430,"tag":514,"props":900,"children":902},{"style":901},"--shiki-light:#F76D47;--shiki-default:#F78C6C;--shiki-dark:#F78C6C",[903],{"type":435,"value":904}," 100\n",{"type":430,"tag":514,"props":906,"children":908},{"class":516,"line":907},12,[909],{"type":430,"tag":514,"props":910,"children":911},{"style":521},[912],{"type":435,"value":913},"        }\n",{"type":430,"tag":514,"props":915,"children":917},{"class":516,"line":916},13,[918],{"type":430,"tag":514,"props":919,"children":920},{"style":547},[921],{"type":435,"value":922},"    ]\n",{"type":430,"tag":514,"props":924,"children":926},{"class":516,"line":925},14,[927],{"type":430,"tag":514,"props":928,"children":929},{"style":521},[930],{"type":435,"value":931},"}\n",{"type":430,"tag":461,"props":933,"children":935},{"id":934},"file-key-example",[936],{"type":435,"value":937},"File Key Example",{"type":430,"tag":468,"props":939,"children":940},{"color":470,"icon":471},[941],{"type":430,"tag":431,"props":942,"children":943},{},[944,948,951,953,959,961,965],{"type":430,"tag":477,"props":945,"children":946},{},[947],{"type":435,"value":481},{"type":430,"tag":483,"props":949,"children":950},{},[],{"type":435,"value":952},"\nIf you are using a path on the HPC, the file must exist in a directory in the ",{"type":430,"tag":510,"props":954,"children":956},{"className":955},[],[957],{"type":435,"value":958},"/tp",{"type":435,"value":960}," directory.\nFor more details, see our ",{"type":430,"tag":438,"props":962,"children":963},{"href":231},[964],{"type":435,"value":492},{"type":435,"value":494},{"type":430,"tag":496,"props":967,"children":969},{"id":968},"be-sure-to-update-lines-1-3-8-and-9-1",[970],{"type":435,"value":501},{"type":430,"tag":503,"props":972,"children":974},{"className":505,"code":973,"language":507,"meta":424,"style":424},"{\n    \"genome\": \"hg19\",\n    \"nativetracks\": \"RefGene\",\n    \"position\": \"chr17:7565096-7590856\",\n    \"block\": true,\n    \"tracks\": [\n        {\n            \"type\": \"bigwig\",\n            \"name\": \"Track name\",\n            \"file\": \"proteinpaint_demo\\/hg19\\/bigwig\\/file.bw\",  \n            \"height\": 100\n        }\n    ]\n}\n",[975],{"type":430,"tag":510,"props":976,"children":977},{"__ignoreMap":424},[978,985,1020,1055,1090,1117,1136,1143,1178,1213,1280,1303,1310,1317],{"type":430,"tag":514,"props":979,"children":980},{"class":516,"line":517},[981],{"type":430,"tag":514,"props":982,"children":983},{"style":521},[984],{"type":435,"value":524},{"type":430,"tag":514,"props":986,"children":987},{"class":516,"line":527},[988,992,996,1000,1004,1008,1012,1016],{"type":430,"tag":514,"props":989,"children":990},{"style":521},[991],{"type":435,"value":533},{"type":430,"tag":514,"props":993,"children":994},{"style":536},[995],{"type":435,"value":539},{"type":430,"tag":514,"props":997,"children":998},{"style":521},[999],{"type":435,"value":544},{"type":430,"tag":514,"props":1001,"children":1002},{"style":547},[1003],{"type":435,"value":550},{"type":430,"tag":514,"props":1005,"children":1006},{"style":521},[1007],{"type":435,"value":544},{"type":430,"tag":514,"props":1009,"children":1010},{"style":536},[1011],{"type":435,"value":559},{"type":430,"tag":514,"props":1013,"children":1014},{"style":521},[1015],{"type":435,"value":544},{"type":430,"tag":514,"props":1017,"children":1018},{"style":521},[1019],{"type":435,"value":568},{"type":430,"tag":514,"props":1021,"children":1022},{"class":516,"line":571},[1023,1027,1031,1035,1039,1043,1047,1051],{"type":430,"tag":514,"props":1024,"children":1025},{"style":521},[1026],{"type":435,"value":533},{"type":430,"tag":514,"props":1028,"children":1029},{"style":536},[1030],{"type":435,"value":581},{"type":430,"tag":514,"props":1032,"children":1033},{"style":521},[1034],{"type":435,"value":544},{"type":430,"tag":514,"props":1036,"children":1037},{"style":547},[1038],{"type":435,"value":550},{"type":430,"tag":514,"props":1040,"children":1041},{"style":521},[1042],{"type":435,"value":544},{"type":430,"tag":514,"props":1044,"children":1045},{"style":536},[1046],{"type":435,"value":598},{"type":430,"tag":514,"props":1048,"children":1049},{"style":521},[1050],{"type":435,"value":544},{"type":430,"tag":514,"props":1052,"children":1053},{"style":521},[1054],{"type":435,"value":568},{"type":430,"tag":514,"props":1056,"children":1057},{"class":516,"line":609},[1058,1062,1066,1070,1074,1078,1082,1086],{"type":430,"tag":514,"props":1059,"children":1060},{"style":521},[1061],{"type":435,"value":533},{"type":430,"tag":514,"props":1063,"children":1064},{"style":536},[1065],{"type":435,"value":619},{"type":430,"tag":514,"props":1067,"children":1068},{"style":521},[1069],{"type":435,"value":544},{"type":430,"tag":514,"props":1071,"children":1072},{"style":547},[1073],{"type":435,"value":550},{"type":430,"tag":514,"props":1075,"children":1076},{"style":521},[1077],{"type":435,"value":544},{"type":430,"tag":514,"props":1079,"children":1080},{"style":536},[1081],{"type":435,"value":636},{"type":430,"tag":514,"props":1083,"children":1084},{"style":521},[1085],{"type":435,"value":544},{"type":430,"tag":514,"props":1087,"children":1088},{"style":521},[1089],{"type":435,"value":568},{"type":430,"tag":514,"props":1091,"children":1092},{"class":516,"line":647},[1093,1097,1101,1105,1109,1113],{"type":430,"tag":514,"props":1094,"children":1095},{"style":521},[1096],{"type":435,"value":533},{"type":430,"tag":514,"props":1098,"children":1099},{"style":536},[1100],{"type":435,"value":657},{"type":430,"tag":514,"props":1102,"children":1103},{"style":521},[1104],{"type":435,"value":544},{"type":430,"tag":514,"props":1106,"children":1107},{"style":547},[1108],{"type":435,"value":550},{"type":430,"tag":514,"props":1110,"children":1111},{"style":668},[1112],{"type":435,"value":671},{"type":430,"tag":514,"props":1114,"children":1115},{"style":521},[1116],{"type":435,"value":568},{"type":430,"tag":514,"props":1118,"children":1119},{"class":516,"line":678},[1120,1124,1128,1132],{"type":430,"tag":514,"props":1121,"children":1122},{"style":521},[1123],{"type":435,"value":533},{"type":430,"tag":514,"props":1125,"children":1126},{"style":536},[1127],{"type":435,"value":688},{"type":430,"tag":514,"props":1129,"children":1130},{"style":521},[1131],{"type":435,"value":544},{"type":430,"tag":514,"props":1133,"children":1134},{"style":547},[1135],{"type":435,"value":697},{"type":430,"tag":514,"props":1137,"children":1138},{"class":516,"line":700},[1139],{"type":430,"tag":514,"props":1140,"children":1141},{"style":521},[1142],{"type":435,"value":706},{"type":430,"tag":514,"props":1144,"children":1145},{"class":516,"line":709},[1146,1150,1154,1158,1162,1166,1170,1174],{"type":430,"tag":514,"props":1147,"children":1148},{"style":521},[1149],{"type":435,"value":715},{"type":430,"tag":514,"props":1151,"children":1152},{"style":547},[1153],{"type":435,"value":720},{"type":430,"tag":514,"props":1155,"children":1156},{"style":521},[1157],{"type":435,"value":544},{"type":430,"tag":514,"props":1159,"children":1160},{"style":521},[1161],{"type":435,"value":729},{"type":430,"tag":514,"props":1163,"children":1164},{"style":521},[1165],{"type":435,"value":734},{"type":430,"tag":514,"props":1167,"children":1168},{"style":536},[1169],{"type":435,"value":739},{"type":430,"tag":514,"props":1171,"children":1172},{"style":521},[1173],{"type":435,"value":544},{"type":430,"tag":514,"props":1175,"children":1176},{"style":521},[1177],{"type":435,"value":568},{"type":430,"tag":514,"props":1179,"children":1180},{"class":516,"line":750},[1181,1185,1189,1193,1197,1201,1205,1209],{"type":430,"tag":514,"props":1182,"children":1183},{"style":521},[1184],{"type":435,"value":715},{"type":430,"tag":514,"props":1186,"children":1187},{"style":547},[1188],{"type":435,"value":760},{"type":430,"tag":514,"props":1190,"children":1191},{"style":521},[1192],{"type":435,"value":544},{"type":430,"tag":514,"props":1194,"children":1195},{"style":521},[1196],{"type":435,"value":729},{"type":430,"tag":514,"props":1198,"children":1199},{"style":521},[1200],{"type":435,"value":734},{"type":430,"tag":514,"props":1202,"children":1203},{"style":536},[1204],{"type":435,"value":777},{"type":430,"tag":514,"props":1206,"children":1207},{"style":521},[1208],{"type":435,"value":544},{"type":430,"tag":514,"props":1210,"children":1211},{"style":521},[1212],{"type":435,"value":568},{"type":430,"tag":514,"props":1214,"children":1215},{"class":516,"line":788},[1216,1220,1225,1229,1233,1237,1242,1246,1250,1254,1258,1262,1267,1271,1275],{"type":430,"tag":514,"props":1217,"children":1218},{"style":521},[1219],{"type":435,"value":715},{"type":430,"tag":514,"props":1221,"children":1222},{"style":547},[1223],{"type":435,"value":1224},"file",{"type":430,"tag":514,"props":1226,"children":1227},{"style":521},[1228],{"type":435,"value":544},{"type":430,"tag":514,"props":1230,"children":1231},{"style":521},[1232],{"type":435,"value":729},{"type":430,"tag":514,"props":1234,"children":1235},{"style":521},[1236],{"type":435,"value":734},{"type":430,"tag":514,"props":1238,"children":1239},{"style":536},[1240],{"type":435,"value":1241},"proteinpaint_demo",{"type":430,"tag":514,"props":1243,"children":1244},{"style":818},[1245],{"type":435,"value":831},{"type":430,"tag":514,"props":1247,"children":1248},{"style":536},[1249],{"type":435,"value":559},{"type":430,"tag":514,"props":1251,"children":1252},{"style":818},[1253],{"type":435,"value":831},{"type":430,"tag":514,"props":1255,"children":1256},{"style":536},[1257],{"type":435,"value":739},{"type":430,"tag":514,"props":1259,"children":1260},{"style":818},[1261],{"type":435,"value":831},{"type":430,"tag":514,"props":1263,"children":1264},{"style":536},[1265],{"type":435,"value":1266},"file.bw",{"type":430,"tag":514,"props":1268,"children":1269},{"style":521},[1270],{"type":435,"value":544},{"type":430,"tag":514,"props":1272,"children":1273},{"style":521},[1274],{"type":435,"value":872},{"type":430,"tag":514,"props":1276,"children":1277},{"style":547},[1278],{"type":435,"value":1279},"  \n",{"type":430,"tag":514,"props":1281,"children":1282},{"class":516,"line":880},[1283,1287,1291,1295,1299],{"type":430,"tag":514,"props":1284,"children":1285},{"style":521},[1286],{"type":435,"value":715},{"type":430,"tag":514,"props":1288,"children":1289},{"style":547},[1290],{"type":435,"value":890},{"type":430,"tag":514,"props":1292,"children":1293},{"style":521},[1294],{"type":435,"value":544},{"type":430,"tag":514,"props":1296,"children":1297},{"style":521},[1298],{"type":435,"value":729},{"type":430,"tag":514,"props":1300,"children":1301},{"style":901},[1302],{"type":435,"value":904},{"type":430,"tag":514,"props":1304,"children":1305},{"class":516,"line":907},[1306],{"type":430,"tag":514,"props":1307,"children":1308},{"style":521},[1309],{"type":435,"value":913},{"type":430,"tag":514,"props":1311,"children":1312},{"class":516,"line":916},[1313],{"type":430,"tag":514,"props":1314,"children":1315},{"style":547},[1316],{"type":435,"value":922},{"type":430,"tag":514,"props":1318,"children":1319},{"class":516,"line":925},[1320],{"type":430,"tag":514,"props":1321,"children":1322},{"style":521},[1323],{"type":435,"value":931},{"type":430,"tag":1325,"props":1326,"children":1327},"style",{},[1328],{"type":435,"value":1329},"html .light .shiki span {color: var(--shiki-light);background: var(--shiki-light-bg);font-style: var(--shiki-light-font-style);font-weight: var(--shiki-light-font-weight);text-decoration: var(--shiki-light-text-decoration);}html.light .shiki span {color: var(--shiki-light);background: var(--shiki-light-bg);font-style: var(--shiki-light-font-style);font-weight: var(--shiki-light-font-weight);text-decoration: var(--shiki-light-text-decoration);}html .default .shiki span {color: var(--shiki-default);background: var(--shiki-default-bg);font-style: var(--shiki-default-font-style);font-weight: var(--shiki-default-font-weight);text-decoration: var(--shiki-default-text-decoration);}html .shiki span {color: var(--shiki-default);background: var(--shiki-default-bg);font-style: var(--shiki-default-font-style);font-weight: var(--shiki-default-font-weight);text-decoration: var(--shiki-default-text-decoration);}html .dark .shiki span {color: var(--shiki-dark);background: var(--shiki-dark-bg);font-style: var(--shiki-dark-font-style);font-weight: var(--shiki-dark-font-weight);text-decoration: var(--shiki-dark-text-decoration);}html.dark .shiki span {color: var(--shiki-dark);background: var(--shiki-dark-bg);font-style: var(--shiki-dark-font-style);font-weight: var(--shiki-dark-font-weight);text-decoration: var(--shiki-dark-text-decoration);}",{"title":424,"searchDepth":527,"depth":527,"links":1331},[1332,1335],{"id":463,"depth":527,"text":466,"children":1333},[1334],{"id":498,"depth":571,"text":501},{"id":934,"depth":527,"text":937,"children":1336},[1337],{"id":968,"depth":571,"text":501},"markdown","content:5.visualization-community:3.code-block-library:5.bigwig.md","content","5.visualization-community/3.code-block-library/5.bigwig.md","5.visualization-community/3.code-block-library/5.bigwig","md",[1345,1347],{"_path":261,"title":260,"description":1346},"These code block examples can be used to generate a figure using bam data as seen in VisCom.",{"_path":267,"title":266,"description":1348},"These code block examples can be used to generate a figure using bigwig stranded data as seen in VisCom.",1791243635093]