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For more on Data Access Units, see ",{"type":429,"tag":711,"props":1156,"children":1159},{"href":1157,"rel":1158},"https://university.stjude.cloud/docs/genomics-platform/about-our-data/dau-and-datasets/#data-access-unit",[748],[1160],{"type":435,"value":751},{"type":435,"value":641},{"type":429,"tag":489,"props":1163,"children":1164},{},[1165,1174],{"type":429,"tag":511,"props":1166,"children":1167},{},[1168],{"type":429,"tag":444,"props":1169,"children":1171},{"className":1170},[],[1172],{"type":435,"value":1173},"sj_diseases",{"type":429,"tag":511,"props":1175,"children":1176},{},[1177,1179,1185,1187,1192,1194,1200,1202,1207,1209,1214],{"type":435,"value":1178},"If your data request was process after August 18, 2020, the field should be interpreted as the harmonized St. Jude Cloud diagnosis based on the best available information (data provided by the lab or PI and followup by scientists on the St. Jude Cloud team). If your data request was processed before August 18, 2020, this field should be interpreted as the disease identifier assigned at the time of genomic sequencing (namely, the diagnosis known at the time of genomic testing may not be the best available information). ",{"type":429,"tag":1180,"props":1181,"children":1182},"strong",{},[1183],{"type":435,"value":1184},"If your data request was processed after August 18, 2020 and you'd like to use the most up to date, harmonized diagnosis",{"type":435,"value":1186},", we recommend using ",{"type":429,"tag":444,"props":1188,"children":1190},{"className":1189},[],[1191],{"type":435,"value":1173},{"type":435,"value":1193}," when including diagnosis in your analysis. If your data request was made before this time ",{"type":429,"tag":1195,"props":1196,"children":1197},"em",{},[1198],{"type":435,"value":1199},"or",{"type":435,"value":1201}," if you wish to use the values exactly as provided by the lab or PI, we recommend using the lab-provided value in ",{"type":429,"tag":444,"props":1203,"children":1205},{"className":1204},[],[1206],{"type":435,"value":781},{"type":435,"value":1208},". 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",{"type":429,"tag":711,"props":1369,"children":1371},{"href":746,"rel":1370},[748],[1372],{"type":435,"value":751},{"type":435,"value":641},{"type":429,"tag":438,"props":1375,"children":1376},{},[1377,1378,1383,1385,1390,1392,1398],{"type":435,"value":709},{"type":429,"tag":444,"props":1379,"children":1381},{"className":1380},[],[1382],{"type":435,"value":449},{"type":435,"value":1384}," file that comes with your data request will contain the list of associated harmonized diagnosis codes (",{"type":429,"tag":444,"props":1386,"children":1388},{"className":1387},[],[1389],{"type":435,"value":1173},{"type":435,"value":1391},") for each sample.\nThese codes represent the harmonized diagnosis values curated by the St. Jude Cloud team and reflect the most up to date information about the sample.\nFor more information about our full disease ontology, please navigate to our ",{"type":429,"tag":711,"props":1393,"children":1395},{"href":746,"rel":1394},[748],[1396],{"type":435,"value":1397},"St. Jude Cloud Disease Ontology section",{"type":435,"value":1399}," to read our white paper and access our downloadable disease ontology.",{"type":429,"tag":430,"props":1401,"children":1403},{"id":1402},"similar-topics",[1404],{"type":435,"value":1405},"Similar Topics",{"type":429,"tag":438,"props":1407,"children":1408},{},[1409,1414,1417,1421,1424],{"type":429,"tag":711,"props":1410,"children":1411},{"href":48},[1412],{"type":435,"value":1413},"About our Decision Process & Terminology",{"type":429,"tag":1304,"props":1415,"children":1416},{},[],{"type":429,"tag":711,"props":1418,"children":1419},{"href":40},[1420],{"type":435,"value":39},{"type":429,"tag":1304,"props":1422,"children":1423},{},[],{"type":429,"tag":711,"props":1425,"children":1426},{"href":67},[1427],{"type":435,"value":1428},"Managing Data Overview",{"title":424,"searchDepth":1430,"depth":1430,"links":1431},2,[1432,1437],{"id":432,"depth":1430,"text":436,"children":1433},[1434,1436],{"id":455,"depth":1435,"text":458},3,{"id":1285,"depth":1435,"text":1288},{"id":1402,"depth":1430,"text":1405},"markdown","content:3.genomics-platform:2.about-our-data:3.metadata-and-clinical-information.md","content","3.genomics-platform/2.about-our-data/3.metadata-and-clinical-information.md","3.genomics-platform/2.about-our-data/3.metadata-and-clinical-information","md",[1445,1446],{"_path":58,"title":57,"description":424},{"_path":67,"title":1447,"description":1448},"Working With Our Data","In this overview, we will explain how to manage your data request(s) from St. Jude Cloud's genomics platform My Dashboard page and how to access and manage your data (once it has been vended to you) from within a DNAnexus project.\nThe DNAnexus genomic ecosystem is the backbone for the computation and storage in St. Jude Cloud.\nThis means that each data request in St. Jude Cloud corresponds to a project in DNAnexus.\nIf you'd like, you can read an introduction to the DNAnexus ecosystem here.\nIf you haven't already, follow this guide to request access to St. Jude data in this secure cloud ecosystem.",1791243634301]